PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01344.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 384aa    MW: 43509.7 Da    PI: 6.5265
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01344.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1292.4e-0996138446
                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                              +k  rr+++NReAAr+sR+RKka +++Lee   +L++  ++L+
  Rsa1.0_01344.1_g00009.1  96 DKMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQELA 138
                              7999**************************8888887776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.6E-886139No hitNo description
SMARTSM003385.2E-493151IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.34795137IPR004827Basic-leucine zipper domain
PfamPF077161.5E-597142IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.94E-697139No hitNo description
PROSITE patternPS000360100115IPR004827Basic-leucine zipper domain
PfamPF141443.8E-29184258IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MMMSSSSSST TQVASLREIG MYEPFQQLSG WENAFNTIGS SSNQNNNNPS SSTVPEVDAR  60
AEADDHNKAN YTSMYNNSVE AEPSSNNDQD EDQVNDKMKR RLAQNREAAR KSRLRKKAHV  120
QQLEESRLKL SQLEQELARA RQQGLCVRNS SDTSYLGPAG TMNTGIATFE MEYTHWLEEQ  180
NKRVSEIRRA LQAHISDIEL KMLVDTCLNH YSNLFRMKAD AAKADVFFLI SGMWRTSTER  240
FFQWIGGFRP SELLNVVMPY IEPLTDQQLL EVRNLQQSSQ QAEEALSQGL DKLQQGLVEN  300
IAVDIRVVES VVSHGAQMAS AMENLQALEG FVNQADHLRK QTLQQMSKIL TTRQAARGLL  360
ALGEYFHRLR ALSSLWAARP RERT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00157DAPTransfer from AT1G22070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1100980.0EU110098.1 Brassica juncea bZIP transcription factor (CdR15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637780.10.0PREDICTED: transcription factor TGA3
RefseqXP_013698022.10.0PREDICTED: transcription factor TGA3
RefseqXP_013698041.10.0PREDICTED: transcription factor TGA3
SwissprotQ392340.0TGA3_ARATH; Transcription factor TGA3
TrEMBLA0A0D3CCB10.0A0A0D3CCB1_BRAOL; Uncharacterized protein
STRINGBra031364.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22070.10.0TGA1A-related gene 3